Russell, A.L., Goodman, S.M., Fiorentino, I., and A.D. Yoder. Population genetic analysis of Myzopoda spp. (Chiroptera: Myzopodidae) in Madagascar. Journal of Mammalogy. (in press).

Heckman, K.L., Hanley, C.L., Rasoloarison, R. and A.D. Yoder. Multiple nuclear loci reveal patterns of incomplete lineage sorting and complex species history within western mouse lemurs (Microcebus). Molecular Phylogenetics and Evolution. (in press).

Naghibalhossaini, F., Yoder, A.D., Tobi, M., and C.P. Stanners. Evolution of a tumorigenic property conferred by Glycophosphatidyl-inositol membrane anchors of CEA gene family members during the primate radiation. Molecular Biology of the Cell (in press).

Karanth, K.P. and Yoder, A.D.. Geographic origins of aDNA samples and prospects for aDNA studies in the tropics. In: Molecular Merkers, PCR, Bioinformatics and Ancient DNA - Technology, Troubleshooting and Applications. (G. Dorado, ed.). Science Publishers (in press).

Russell, A.L., Ranivo, J., Palkovacs, E.P., Goodman, S.M., and A.D. Yoder. Working at the interface of phylogenetics and population genetics: a biogeographic analysis of Triaenops spp (Chiroptera: Hipposideridae) Molecular Ecology, 16:839-851. [pdf]

Heckman, K.L., Rasoazanabary, E., Machlin, E., Godfrey, L.R., and Yoder, A.D.. Incongruence between genetic and morphological diversity in Microcebus griseorufus. BMC Evolutionary Biology. 6: 98 (16 Nov 2006). [pdf]

Yoder, A.D. and Nowak, M.. Has vicariance or dispersal been the predominant biogeographic force in Madagascar?. Annual Review of Ecology, Evolution & Systematics. 37:405-431. [pdf]

Goodman, S.M., Cardiff, S.G., Ranivo, J., Russell, A.L., and Yoder, A.D.. A new species of Emballonura (Emballonuridae: Chiroptera) from the dry regions of Madagascar. American Museum Novitates, No. 3538: 1-24. [pdf]

Yoder, A.D. and Heckman, K.. Mouse lemur phylogeography revises a model of ecogeographic constraint in Madagascar. In: Primate Biogeography: Proggress and Prospects (J. Fleagle and S.M. Lehman, eds.). Kluwer Press, pp. 255-268. [pdf]

Tan, Y., Yoder, A.D., Yamashita, N., and Wen-Hsing Li. Evidence from opsin genes rejects nocturnality in ancestral primates. Proceedings of the National Acadamy of Sciences of the United States of America. 102: 14712-14716. [pdf]

Karanth, K.P. and Yoder, A.D.. Geographic orgins of ancient DNA samples and prospects for ancient DNA studies in the tropics. In: Molecular Markers, PCR, Bioinformatics and Ancient DNA- Technology, Troubleshooting and Applications (G. Dorado, ed.) Science Publishers (in press) [pdf]

Yoder, A.D. and K.L. Heckman. Mouse lemur phylogeography revises a model of ecogeographic constraint in Madagascar. In: Current Issues in Primate Biogeography (J. Fleagle and S.M. Lehman, eds.) Kluwer Press (in press) [pdf]

Yoder, A.D., Olson, L.E., Hanley, C., Heckman, K.L., Rasoloarison, R., Russell, A.L., Ranivo, J., Soarimalala, V., Karanth, K.P., Raselimanana, A.P., and S.M. Goodman. A multidimensional approach for detecting species patterns in Malagasy vertebrates. Proceedings of the National Acadamy of Sciences of the United States of America, Early Edition, Colloquium Paper [pdf]

Karanth, K.P, Delefosse, T., Rakotosamimanana B., and A.D. Yoder. Ancient DNA from Giant extinct lemurs confirms single origin of Malagasy Primates. Proceedings of the National Acadamy of Sciences of the United States of America. 102:14: 5090-5095 [pdf]

Karanth, K.P., Palkovacs, E., Gerlach, J., Glaberman, S., Caccone, A., and A.D. Yoder. Native Seychelles tortoises or Aldabran imports? The importance of radiocarbon dating for ancient DNA studies. Amphibia-Reptilia 26: 116-121[pdf]

Olson, L.E., Goodman, S., and A.D. Yoder. Illumination of cryptic species boundaries in long-tailed shrew tenrecs (Mammalia: Tenrecidae; Microgale) provides insights into geographic variation and distributional constraints. Biological Journal of the Linnean Society, 83:1-22 [pdf]

Yoder, A.D. and Yang, Z. Divergence Dates For Malagasy Lemurs Estimated From Multiple Gene Loci: geological and evolutionary context. Molecular Ecology, 13:757-773 [pdf]

Kunstman, K., Puffer, B., Korber, B., Kuiken, C., Smith, U., Kunstman, J., Stanton, J., Agy, M., Shibata, R., Yoder, A.D., Pillai, S., Doms, R., Marx, P., and S. Wolinsky. Structure and Function of CC-Chemokine Receptor 5 Homologues Derived from Representative Primate Species and Subspecies of the Taxonomic Suborders Prosimii and Anthropoidea. Journal of Virology 77(22): 12310-12318. [pdf]

Yoder, A.D. and J.J. Flynn. Origin of Malagasy Carnivora. In: The Natural History of Madagascar (S. M. Goodman and J. Benstead, eds.) University of Chicago Press, pp. 1253-1256. [pdf]

Yoder, A.D. Phylogeny of the lemurs. In: The Natural History of Madagascar (S. M. Goodman and J. Benstead, eds.) University of Chicago Press, pp. 1242-1247. [pdf]

Yang, Z. and Yoder, A.D. Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species. Systematic Biology, 52(5):705-716. [pdf]

Yoder, A.D. The phylogenetic position of genus Tarsius: whose side are you on? In: Tarsiers: Past, Present, and Future (P.C. Wright, E.L. Simons and S. Gursky, eds.) Rutgers University Press, pp. 161-175. [pdf]

Eriksson, T., Hibbs, M.S., Yoder, A.D., Delwiche, C.F., and M.J. Donoghue. The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the trnL/F region of chloroplast DNA. International Journal of Plant Sciences, 164(2):197-211. [pdf]

Yoder, A.D., Burns, M.M., Zehr, S., Delefosse, T., Veron, G., Goodman, S.M., and J.J. Flynn. Single origin of Malagasy Carnivora from an African ancestor. Nature, 421: 734-737. [pdf]

Yoder, A.D., Burns, M.M., and F. Genin. Molecular evidence of reproductive isolation in sympatric sibling species of mouse lemurs. International Journal of Primatology, 23: 1335-1343. [pdf]

Olson, L.E. and A.D. Yoder. Using secondary structure to identify ribosomal numts: cautionary examples from the human genome. Molecular Biology and Evolution, 19(1): 93-100 [pdf]

Yoder, A.D. and T. Delefosse. Ancient DNA. McGraw-Hill, Yearbook of Science and Technology, pp. 9-14. [pdf]

Yoder, A.D., Irwin, J.A., and B. Payseur. Failure of the ILD to determine data combinability for slow loris phylogeny. Systematic Biology, 50: 408-424. [pdf]

Yoder, A.D. Ancient DNA from Megaladapis edwardsi. Folia Primatol (Basel), 72(6):342-4 [pdf]

Yoder, A.D., Rasoloarison, R., Goodman, S., Ganzhorn, J., S., Irwin, J.A., Atsalis, S. Ravosa, M.J., and J.U.
Ganzhorn. Remarkable species diversity in Malagasy mouse lemurs (Primates, Microcebus) Proceedings of the National Academy of Sciences, 97: 11325-11330. [pdf]

Yoder, A.D., Irwin, J.A., Rakotoarisoa, S.V., and S. Goodman. Genetic tests of the taxonomic status of Lemur catta from the high mountain zone of the Andringtra Massif, Madagascar. Journal of Zoology, 252:1-9. [pdf]

Yoder, A.D. and Z. Yang. Estimation of primate speciation dates using local molecular clocks. Molecular Biology and Evolution, 17(7):1081-1090. [pdf] [dataset]