UPE 302 Physiological Ecology and Ecosystem Science

Syllabus - Spring 2005

Questions? Contact james.f.reynolds@duke.edu

Date Lecturer Topic/Reading List
T, 18-Jan Jim Reynolds

An Entangled Bank
A Historical Overview

Outline Ecological History
Defining Ecology

Raymond L Lindeman (1942) The Trophic-Dynamic Aspect of Ecology
Ecology, Vol. 23, No. 4. (Oct., 1942), pp. 399-417


Herb Bormann
Tyler World Prize for Environmental Achievement; Eminent Ecologist, ESA

Bormann, FH Ecology: A Personal History. Annual Review of Energy and the Environment (1996) Vol 21: 1-29
 
TH, 20-Jan Jim Reynolds

Robert V O'Neill
MacArthur Award Recipient, 1999

O'Neill, RV (2001) Is it time to bury the ecosystem concept? (With full military honors, of course!). Ecology, 82, 3275-3284

Recommended: Real, LA & Brown, JH (eds) (1991) Foundations of Ecology: Classic Papers with Commentaries, The University of Chicago Press, Chicago, pp. 906. Forty classic papers that have laid the foundations of modern ecology

T, 25-Jan Bill Morris
Richard C Lewontin is an evolutionary geneticist, philosopher of science, and social critic. Best known among biologists for his role in the development of molecular population genetics in the 1960s and 1970s. Lewontin, RC & D Cohen (1969) On population growth in a randomly varying environment. Proceedings National Academy of Sciences 62:1056-1060

Pfister, C (1998) Patterns of variance in stage-structured populations: evolutionary predictions and ecological implications. Proceedings of the National Academy of Sciences USA 95:213-218

Morris and Doak 04.pdf

TH, 27-Jan Ken Glander


Plant/primate interactions; who wins the chemical war?

Daniel H Janzen
Univ Penn. National Academy of Sciences: "...has provided much of our present understanding of coevolution in terrestrial arthropods and plants..."
Herbivores and the Number of Tree Species in Tropical Forests, American Naturalist, 104 (1970): 501-528


Kenneth Glander
, (1994) "Nonhuman primate self-medication with wild plant foods" in Eating on the Wild Side, NL Etkin (ed), The University of Arizona Press. Pp. 227-239

T, 1-Feb Mark Rausher

Daniel H Janzen (1980) When is it coevolution?
Evolution
34 (3): 611-612

Fox, LL (1981) Defense and dynamics in plant-herbivore
systems. American Zoologist 21:853-864

John R Stinchcombe & Mark D Rausher (2001) Diffuse Selection on Resistance to Deer Herbivory in the Ivyleaf Morning Glory, Ipomoea hederacea. American Naturalist 158: 376–388

 
TH, 3-Feb Emily Bernhardt Bormann, FH & GE Likens (1967) Nutrient Cycling. Science 155:
424- 429

Likens, GE, F Bormann, RS Pierce, & WA Reiners. 1978.
Recovery of a deforested ecosystem. Science 199: 492-496.

Bernhardt, ES, GE Likens, DCBuso, & CT Driscoll. 2003.
In-stream uptake dampens effect of major forest disturbance on watershed
nitrogen export. Proceedings of the National Academy of Science 100:
10304-10308.
(Commentary by Robert O. Hall, Jr., "A stream’s role in watershed nutrient export" See: PNAS)

Gene Likens' research focuses on the ecology and biogeochemistry of forest and aquatic ecosystems, primarily through long-term studies at the Hubbard Brook Experimental Forest, in the White Mountains of New Hampshire. He was the co-founder of the Hubbard Brook Ecosystem Study in 1963, which has shed light on critical links between ecosystem function and land-use practices. FH Bormann (see above) and Likens were co-recipients of the 2003 Blue Planet Prize for outstanding scientific research that helps to solve global environmental problems. Source  
T, 8-Feb Dean Urban

Tansley AG (1935) The use and abuse of vegetational concepts and terms. Ecology, 16, 284-307

Scale-specific inference using wavelets. Keitt, T & D Urban

TH, 10-Feb Michael Lavine Statistical Modelling of Seedling Mortality, M Lavine, B Beckage & J Clark    
T, 15-Feb Gaby Katul

Simon Levine, National Academy of Sciences: "Through brilliant and original theoretical work on the dynamics of ecological communities and landmark collaborations merging theory with experiment, Levin helped create a framework for studying the ecology and evolution of populations in heterogeneous environments. He is a leader in transforming ecology into a quantitative science with rigorous theoretical foundations."

A Okubo
& Si Levine (1989) A theoretical framework for data analysis of wind dispersal of seeds and pollen. Ecology 70(2): 329-338. This paper proposes an analytic framework for estimating distances of seed dispersal. Key are simplifying assumptions concerning the structure of turbulent flows inside plant canopie

Joël Sommeria (2001) Unweaving the whirls, Nature (Vol 413): 575 This paper outlines research priorities for understanding turbulent flows, logically hindering progress on seed dispersal

 

 

 

Gaby's never-ending quest to quantify turbulent flow in coffee. Dedicated to his goal, he consumes 34 cups of cappuccino daily.

 
TH, 17-Feb Justin Wright

Biodiversity in regulating ecosystem functioning

   
T, 22-Feb Stuart Pimm      
TH, 24-Feb Dan Rittschof McLean, RB (1974) Direct shell acquisition by hermit crabs from gastropods.  Experientia 30:206-208.
Rittschof, Dan (1993) Body odors and neutral-basic peptide mimics: A review of responses by marine organisms.  Am. Zool. 33:487-493.
Rittschof, D & Cohen J (2004) Crustacean peptide and peptide-like pheromones and kairomonoes. (In Press) Peptides Word Document & Figures
T, 1-Mar Dan Richter The co-evolution of soils and ecosystems

 

 
TH, 3-Mar Dan Richter
Global soil change
T, 8-Mar Sari Palmroth

Olle Björkman is best known for his pioneering research on plant biochemical adaptation, including (i) efficiently in sun vs. shade environments, (ii) at high temperatures, and (iii) in high light. He is a member of both the US National Academy of Sciences and Royal Swedish Academy of Science.

 

Björkman, O (1981) Responses to different quantum flux densities. In: Encyclopaedia of plant physiology (new series), vol. 12A. Eds. OL Lange, PS Nobel, CB Osmond, H Ziegler. Springer, Berlin, Heidelberg, New York. pp. 37-107.

Stenberg, P, Palmroth, S, Bond, BJ, Sprugel, DG & Smolander, H (2001) Shoot structure and photosynthetic efficiency along the light gradient in Scots pine canopy. Tree Physiology 21: 805-814.
 
TH, 10-Mar Ram Oren Waring RH, Schroeder PE, & Oren R (1982) Application of the pipe model theory to predict canopy leaf area. Canadian Journal of Forest Research 12:556-560

Schäfer KVR, Oren R, & Tenhunen JD (2000) The effect of tree height on crown-level stomatal conductance. Plant, Cell and Environment 23:365-377
 Richard Waring (recently retired) is a physiological ecologist at Oregon State University. Much of his research focused on the potential effects of environmental change on forest productivity in landscapes of the Pacific Northwest (abbr. CV). He led the OTTER project (Oregon Transect Terrestrial Ecosystem Research) to develop remote sensing tools for estimating climate-forest relationships.  
BREAK
SPRING BREAK
T, 22-Mar Will Wilson
   
TH, 24-Mar Amilcare Porporato  
T, 29-Mar Jim Clark G. Evelyn Hutchinson (1903-1991) is known as the "father of modern limnology." A symposium was held at Yale in October (2003) in honor of his 100th birthday.

Hutchinson, GE
(1959)
Homage to Santa Rosalia; or, Why are there so many kinds of animals. American Naturalist 93:145-159

James S Clark (2005) Why environmental scientists are becoming Bayesians Ecology Letters, (2005) 8: 2–14

James S Clark, Shannon Ladeau & Ines Ibanez, Fecundity of Trees and the Colonization-Competition Hypothesis. Ecological Monographs

 

 
TH, 31-Mar  


 

 
T, 5-Apr Bill Kirby-Smith Will the Circle Be Unbroken?: The Water Quality Impacts in Estuaries of Converting Farmland to Wetlands

Carter, LJ (1975) Agriculture: A new frontier in coastal North Carolina. Science 189: 271-275.

Watson, RT (2002) An international assessment of agricultural science and technology. Bioscience 52 (12): 1060-1061

Castro, P & ME Huber (2003) Estuaries: Where Rivers Meet the Sea. Chapter 12 in Marine Biology (4th Edition). Pp 259-276. McGraw-Hill, Boston, MA (OR any other section on estuaries in a marine biology or oceanography text)
 
TH, 7-Apr Andy Read

T, 12-Apr Larry Crowder

 

 

 
TH, 14-Apr William Schlesinger      
T, 19-Apr Jim Reynolds

José Rial et al (2004) Nonlinearities, Feedbacks and Critical Thresholds within the Earth's Climate System. Climatic Change



Fact-sheet Thermohaline Circulation

Aquatic versus terrestial systems: the evidence
 
TH, 21-Apr Norm Christensen


Eugene Odum
was one of the most influential figures in the history of ecology in the 20th century

EP Odum (1969) The strategy of ecosystem development Science 164: 262-270

JH Connell & RO Slatyer (1977) Mechanisms of succession in natural communities and their role in community stability and organization.  American Naturalist 111: 1119-1144 [a Citation Classic in Current Contents, Nov. 13,1989]

Clements FE (1936) Nature and structure of the climax. Journal of Ecology 24: 252-284

Henry Chandler Cowles (1899) The Ecological Relations of the Vegetation on the Sand Dunes of Lake Michigan Botanical Gazette,pp 167-202 & pp 281-308

Henry Cowles is famous for his pioneer work on ecological succession. His PhD work was entitled, "The Ecological Relations of the Vegetation on the Sand Dunes of Lake Michigan", contained many new ideas on this topic

 

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