COALESCE: estimates the effective population size of a single
DnaSP: estimates several measures of DNA sequence
FLUCTUATE: estimates the effective population size and an
GENETREE: allows ancestral inference from DNA sequences
ProSeq: PROcessor of SEQuences- aligns, edits, and
SITES: analysis of comparative DNA sequence data.
Allelic analyses
Arlequin: population genetics software environment able
BOTTLENECK: a program for detecting recent effective population
FSTAT: calculates Weir & Cockerham's estimators of F-
Hickory: Software for analysis of geographic structure in genetic data.
GenePop on the web: population genetic software,
also by FTP.
MIGRATE: estimates the effective population sizes and migration
MultSim: estimates founder numbers from allelic data on source and founder populations
POPGENE: analysis of genetic variation among and within populations
TFPGA (Tools for population genetic analysis): a Windows
Phenotypic data
CPC: Common Principal Component Analysis software
Quantitative genetics
QTL Cartographer.
Phylogenetics
DAMBE: integrated software package for comparative molecular data.
Instructional software
PopBio: population biology simulation package written for
Population genetic applets
that can be run from the web,
Populus: simulation software for population biology and
Back to Resources homepage.
Last updated, 1/29/2006
constant population using nonrecombining sequences.
variation within and between populations, linkage disequilibrium,
recombination, gene flow and gene conversion.
exponential growth rate of a single growing population using
nonrecombining sequences.
from single
or subdivided populations which conform to the
infinite sites model.
analyzes sequence data.
to handle large samples of molecular data (RFLPs, DNA sequences,
microsatellites), while retaining the capacity of analyzing
conventional genetic data (standard multi-locus data or mere allele
frequency data).
size reductions from allele data frequencies.
statistics.
Estimates F-statistics from dominant or codominant marker data.
Genepop computes tests for Hardy-Weinberg equilibrium, differentiation
and disequilibrium as well as classical population parameters.
rates of two constant populations using nonrecombining
sequences, microsatellite data or enzyme electrophoretic
data.
using co-dominant and dominant markers.
program for the analysis of allozyme
and molecular data. Among its
features include an intuitive word
processor-like interface, the
ability to analyze both codominant and
dominant markers, and support
for hierarchical data sets.
written by Patrick Phillips: a data analysis technique
that allows two or more matrices to be compared in a
hierarchical fashion.
Quantitative genetics packages compiled by B. Walsh.
HY-PHY: hypothesis testing using phylogenies.
OUCH: OU models for phylogenetic comparative hypotheses
PUZZLE: reconstruct trees from sequence by maximum likelihood.
PHYLIP.
Big list of phylogenetics programs.
the Macintosh; contains components for population growth,
population genetics, predator/prey interactions, and inter-
specific competition.
including genetic drift, Wahlund effect, etc.
evolutionary ecology.