Search ChlamyEST

(We are in the process of migrating the database to a faster server, please be patient)

• Retrieves contigs,scaffold location, and blast statistics where blast hit defline matches search term
• Criteria used:
  • WU_Blastx evalue <= 1e-10
  • Only best scoring hit reported per contig
• Boolean 'AND', 'OR' and 'NOT' searches are supported
  (e.g. 'tubulin AND beta','centrin OR caltractin', 'tubulin NOT beta').
  

• Sequence,scaffold location,library and contig data for an EST clone are retrieved
• EST clones produced by the Chlamy Genome Project are named based on 96 well plate location: '1031051G02'
  • project:1031 (stress II)
  • plate:051
  • row:G
  • column:02
• Kazusa ESTs are designated by a GenBank accession: 'AV619982'

• Annotation,scaffold location,sequence and EST composition are retrieved
• 2 contig formats are in use:
  • Contigs derived from the 20021010 and earlier assemblies are designated using an assembly date,ace,contig format: '20020630.4067'
  • Contigs derived from ACEGs are designated by a scaffold,ace,contig and type format: '1.3.2.91'
• Searching for an ACE will retrieve data for all contigs associated with the ACE(G).
  For example, searching for 20020630.4067 will retrieve contigs 20020630.4067.1 and 20020630.4067.2;
  searching for ACEG 1.3 will return contigs 1.3.1.91 and 1.3.2.11.